Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs1072203 chr7:43951688 A/G 1.56E-9 502 31.15 33.5 31.03 KM Plot
THCA rs10788610 chr10:90403740 G/A 2.7E-5 499 32.9 31.3 27.02 KM Plot
THCA rs10838519 chr11:45839032 A/T 2.37E-5 492 32.52 30.63 29.37 KM Plot
THCA rs10904513 chr10:5530395 G/A 2.19E-5 479 31.83 31.45 31.62 KM Plot
THCA rs10904514 chr10:5530775 G/A 2.49E-5 479 31.88 31.45 31.7 KM Plot
THCA rs10951352 chr7:32812489 G/A 9.73E-5 500 31.43 31.57 32.1 KM Plot
THCA rs10951744 chr7:43933823 T/C 1.53E-9 501 31.15 33.58 31.03 KM Plot
THCA rs10951745 chr7:43973841 A/G 2.61E-8 499 31.03 33.52 32.37 KM Plot
THCA rs10951746 chr7:43974174 T/G 2.61E-8 499 31.03 33.52 32.37 KM Plot
THCA rs11007399 chr10:29324879 A/G 2.97E-9 498 31.8 30.38 29.28 KM Plot
THCA rs11007400 chr10:29324960 T/C 2.97E-9 498 31.8 30.38 29.28 KM Plot
THCA rs11007402 chr10:29326752 G/A 2.75E-9 500 31.8 30.38 29.28 KM Plot
THCA rs11007403 chr10:29326827 A/G 2.53E-9 503 31.8 28.63 29.28 KM Plot
THCA rs11007405 chr10:29326916 T/C 2.75E-9 500 31.8 30.38 29.28 KM Plot
THCA rs11007406 chr10:29327077 C/T 2.75E-9 500 31.8 30.38 29.28 KM Plot